NGS for Diagnosis

Dimension Reduction

Pancancer BRCA


scarHRD and sequenza

Allele frequency and somatic variant

Annotation Redundancy

The 71st Annual Fall Meeting of Korean Society of Pathologists Case presentation at molecular pathology lecture

NGS interpretation database and search

An NGS pathology report contains an interpretation section to describe the clinical interpretation of the found genomic variants of the patient’s cancer sample. The interpretation is different from each variant and each cancer type or the other clinical factors. The pathologists describe the interpretation and archive those in certain methods including tables like excel. I make a shinyapp to archive the interpretations to a database and search them.


Abstract Introduction of Bayesian approch in base calling and copy number variation (CNV). This is for the intradepartment lecture. url_slides: ‘’